Matt Ridley once again graciously responds in the comments.  Our differences appear to have largely evaporated.  Ridley’s in blockquotes, I’m not.

But your challenge mistakes my argument. I have not argued that there is
no positive correlation of innovation with population, only that, as
population size increases, population size alone will become a
diminishing influence compared with population interconnectedness. You
are trying to push me into a rhetorical box I don’t wish to occupy: that
at some level population growth stops helping innovation or starts
harming it. That may be a case somebody wants to make — but it’s not
the case I’ve argued.

Several of your statements seem hard to interpret any other way, especially: “As for small countries leading the world, I would argue it is almost the
rule,” and “To have 10,000 people is a lot better than to have 5,000.
But to have a billion instead of 500m? I’m not convinced.”  Still, if you agree that population is good for innovation, I’m satisfied.

Instead I have argued that bigger populations will always be more
innovative, of course. But once populations are large the most effective
way to make them more innovative is not so much to make them larger as
to make them more interconnected.

Sure, as a matter of policy, it’s far easier to remove barriers to communication and trade than to increase the number of humans on earth.  But that doesn’t mean that interconnection is “more important” than population, just more policy-sensitive. 

A genetic analogy might help. Bigger genomes get more mutations. But
genomes that exchange genes more often — ie, have shorter generation
times — innovate more, because they throw up more combinations of
sequences.

A fine analogy, I’m happy to accept it. 🙂